质粒名称: | pLKO.1 - TRC cloning vector |
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出品公司: | 爱迪基因 |
目录编号: | 10878 |
存储实验室: | David Root |
载体骨架基本信息 |
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载体名称: | pLKO.1 |
载体抗性: | 氨苄霉素 |
空载体大小: | 7032 bp |
完整质粒大小: | 8932 bp |
载体类型: | 哺乳细胞表达,Lentiviral, RNAi |
筛选标记: | 嘌呤霉素 |
高拷贝/低拷贝: | 低拷贝 |
生长条件: | 37 ℃ |
插入基因信息 |
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插入基因名称: | stuffer |
插入大小: | 1900 bp |
克隆方法: | 限制性内切酶 |
5' 克隆位点: | AgeI(未破坏) |
3' 克隆位点: | EcoRI(未破坏) |
5' 测序引物 | LKO.1 5' |
文献引用方法 |
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材料和方法部分: | pLKO.1 - TRC cloning vector was a gift from David Root (爱迪基因 plasmid # 10878) |
参考文献部分: | A lentiviral RNAi library for human and mouse genes applied to an arrayed viral high-content screen. Moffat J, Grueneberg DA, Yang X, Kim SY, Kloepfer AM, Hinkle G, Piqani B, Eisenhaure TM, Luo B, Grenier JK, Carpenter AE, Foo SY, Stewart SA, Stockwell BR, Hacohen N, Hahn WC, Lander ES, Sabatini DM, Root DE. Cell. 2006 Mar 24. 124(6):1283-98. 10.1016/j.cell.2006.01.040 PubMed 16564017 |
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载体基本信息
载体图谱质粒图谱和多克隆位点信息
载体简介
载体序列
LOCUS pLKO.1 - TRC cloning vector 8901 bp ds-DNA circular SYN 10-JAN-2018 DEFINITION 3rd generation transfer plasmid. ACCESSION . VERSION . KEYWORDS pLKO.1 - TRC cloning vector SOURCE synthetic DNA construct ORGANISM synthetic DNA construct REFERENCE 1 (bases 1 to 8901) AUTHORS Moffat J, Grueneberg DA, Yang X, Kim SY, Kloepfer AM, Hinkle G, Piqani B, Eisenhaure TM, Luo B, Grenier JK, Carpenter AE, Foo SY, Stewart SA, Stockwell BR, Hacohen N, Hahn WC, Lander ES, Sabatini DM, Root DE TITLE A lentiviral RNAi library for human and mouse genes applied to an arrayed viral high-content screen. JOURNAL Cell. 2006 Mar 24. 124(6):1283-98. PUBMED 16564017 COMMENT This file is created by Vector NTI http://www.biofeng.com/ COMMENT ORIGDB|GenBank COMMENT VNTAUTHORNAME|biofeng.com| COMMENT VNTNAME|pLKO.1 - TRC cloning vector | FEATURES Location/Qualifiers source 1..8901 /organism="synthetic DNA construct" /mol_type="other DNA" primer_bind 393..413 /label=Puro-F /note="Puromycin resistance gene, forward primer" LTR 624..857 /label=3' LTR (Delta-U3) /note="self-inactivating 3' long terminal repeat (LTR) from HIV-1" polyA_signal 929..1050 /label=SV40 poly(A) signal /note="SV40 polyadenylation signal" primer_bind complement(966..985) /label=SV40pA-R /note="SV40 polyA, reverse primer" primer_bind 1020..1039 /label=EBV-rev /note="SV40 polyA terminator, reverse primer" rep_origin 1090..1225 /label=SV40 ori /note="SV40 origin of replication" primer_bind 1152..1171 /label=SV40pro-F /note="SV40 promoter/origin, forward primer" primer_bind complement(1245..1264) /label=T7 /note="T7 promoter, forward primer" promoter complement(1246..1264) /label=T7 promoter /note="promoter for bacteriophage T7 RNA polymerase" primer_bind complement(1274..1291) /label=M13 Forward /note="In lacZ gene. Also called M13-F20 or M13 (-21) Forward" primer_bind complement(1274..1290) /label=M13 fwd /note="common sequencing primer, one of multiple similar variants" primer_bind complement(1283..1305) /label=M13/pUC Forward /note="In lacZ gene" rep_origin 1432..1887 /direction=RIGHT /label=f1 ori /note="f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis" primer_bind complement(1519..1538) /label=F1ori-R /note="F1 origin, reverse primer" primer_bind 1729..1750 /label=F1ori-F /note="F1 origin, forward primer" promoter 1913..2017 /gene="bla" /label=AmpR promoter CDS 2018..2878 /codon_start=1 /gene="bla" /product="beta-lactamase" /label=AmpR /note="confers resistance to ampicillin, carbenicillin, and related antibiotics" /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS LIKHW" primer_bind complement(2236..2255) /label=Amp-R /note="Ampicillin resistance gene, reverse primer" rep_origin 3049..3637 /direction=RIGHT /label=ori /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" primer_bind 3538..3557 /label=pBR322ori-F /note="pBR322 origin, forward primer" primer_bind 3791..3808 /label=L4440 /note="L4440 vector, forward primer" protein_bind 3925..3946 /label=CAP binding site /bound_moiety="E. coli catabolite activator protein" /note="CAP binding activates transcription in the presence of cAMP." promoter 3961..3991 /label=lac promoter /note="promoter for the E. coli lac operon" protein_bind 3999..4015 /label=lac operator /bound_moiety="lac repressor encoded by lacI" /note="The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-beta-D-thiogalactopyranoside (IPTG)." primer_bind 4004..4026 /label=M13/pUC Reverse /note="In lacZ gene" primer_bind 4023..4039 /label=M13 rev /note="common sequencing primer, one of multiple similar variants" primer_bind 4023..4039 /label=M13 Reverse /note="In lacZ gene. Also called M13-rev" primer_bind 4058..4078 /label=T3 /note="T3 promoter, forward primer" promoter 4060..4078 /label=T3 promoter /note="promoter for bacteriophage T3 RNA polymerase" promoter 4106..4332 /label=RSV promoter /note="Rous sarcoma virus enhancer/promoter" LTR 4333..4513 /label=5' LTR (truncated) /note="truncated 5' long terminal repeat (LTR) from HIV-1" misc_feature 4560..4685 /label=HIV-1 Psi /note="packaging signal of human immunodeficiency virus type 1" misc_feature 5178..5411 /label=RRE /note="The Rev response element (RRE) of HIV-1 allows for Rev-dependent mRNA export from the nucleus to the cytoplasm." promoter 5938..6178 /label=U6 promoter /note="RNA polymerase III promoter for human U6 snRNA" primer_bind 5938..5958 /label=hU6-F /note="Human U6 promoter, forward primer" primer_bind 6109..6128 /label=LKO.1 5' /note="Human U6 promoter, forward primer" misc_feature 8100..8217 /label=cPPT/CTS /note="central polypurine tract and central termination sequence of HIV-1" promoter 8266..8776 /label=hPGK promoter /note="human phosphoglycerate kinase 1 promoter" primer_bind 8695..8713 /label=hPGK-F /note="Human PGK promoter, forward primer" CDS 8798..496 /codon_start=1 /gene="pac from Streptomyces alboniger" /product="puromycin N-acetyltransferase" /label=PuroR /note="confers resistance to puromycin" /translation="MTEYKPTVRLATRDDVPRAVRTLAAAFADYPATRHTVDPDRHIER VTELQELFLTRVGLDIGKVWVADDGAAVAVWTTPESVEAGAVFAEIGPRMAELSGSRLA AQQQMEGLLAPHRPKEPAWFLATVGVSPDHQGKGLGSAVVLPGVEAAERAGVPAFLETS APRNLPFYERLGFTVTADVEVPEGPRTWCMTRKPGA" primer_bind complement(8798..8817) /label=Puro-R /note="Puromycin resistance gene, reverse primer. Also called puro-variant-R" ORIGIN 1 caccgtcgat ccggaccgcc acatcgagcg ggtcaccgag ctgcaagaac tcttcctcac 61 gcgcgtcggg ctcgacatcg gcaaggtgtg ggtcgcggac gacggcgccg cggtggcggt 121 ctggaccacg ccggagagcg tcgaagcggg ggcggtgttc gccgagatcg gcccgcgcat 181 ggccgagttg agcggttccc ggctggccgc gcagcaacag atggaaggcc tcctggcgcc 241 gcaccggccc aaggagcccg cgtggttcct ggccaccgtc ggcgtctcgc ccgaccacca 301 gggcaagggt ctgggcagcg ccgtcgtgct ccccggagtg gaggcggccg agcgcgccgg 361 ggtgcccgcc ttcctggaga cctccgcgcc ccgcaacctc cccttctacg agcggctcgg 421 cttcaccgtc accgccgacg tcgaggtgcc cgaaggaccg cgcacctggt gcatgacccg 481 caagcccggt gcctgacgcc cgccccacga cccgcagcgc ccgaccgaaa ggagcgcacg 541 accccatgca tcggtacctt taagaccaat gacttacaag gcagctgtag atcttagcca 601 ctttttaaaa gaaaaggggg gactggaagg gctaattcac tcccaacgaa gacaagatct 661 gctttttgct tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg 721 ctaactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt 781 gtgtgcccgt ctgttgtgtg actctggtaa ctagagatcc ctcagaccct tttagtcagt 841 gtggaaaatc tctagcagta gtagttcatg tcatcttatt attcagtatt tataacttgc 901 aaagaaatga atatcagaga gtgagaggaa cttgtttatt gcagcttata atggttacaa 961 ataaagcaat agcatcacaa atttcacaaa taaagcattt ttttcactgc attctagttg 1021 tggtttgtcc aaactcatca atgtatctta tcatgtctgg ctctagctat cccgccccta 1081 actccgccca tcccgcccct aactccgccc agttccgccc attctccgcc ccatggctga 1141 ctaatttttt ttatttatgc agaggccgag gccgcctcgg cctctgagct attccagaag 1201 tagtgaggag gcttttttgg aggcctaggg acgtacccaa ttcgccctat agtgagtcgt 1261 attacgcgcg ctcactggcc gtcgttttac aacgtcgtga ctgggaaaac cctggcgtta 1321 cccaacttaa tcgccttgca gcacatcccc ctttcgccag ctggcgtaat agcgaagagg 1381 cccgcaccga tcgcccttcc caacagttgc gcagcctgaa tggcgaatgg gacgcgccct 1441 gtagcggcgc attaagcgcg gcgggtgtgg tggttacgcg cagcgtgacc gctacacttg 1501 ccagcgccct agcgcccgct cctttcgctt tcttcccttc ctttctcgcc acgttcgccg 1561 gctttccccg tcaagctcta aatcgggggc tccctttagg gttccgattt agtgctttac 1621 ggcacctcga ccccaaaaaa cttgattagg gtgatggttc acgtagtggg ccatcgccct 1681 gatagacggt ttttcgccct ttgacgttgg agtccacgtt ctttaatagt ggactcttgt 1741 tccaaactgg aacaacactc aaccctatct cggtctattc ttttgattta taagggattt 1801 tgccgatttc ggcctattgg ttaaaaaatg agctgattta acaaaaattt aacgcgaatt 1861 ttaacaaaat attaacgctt acaatttagg tggcactttt cggggaaatg tgcgcggaac 1921 ccctatttgt ttatttttct aaatacattc aaatatgtat ccgctcatga gacaataacc 1981 ctgataaatg cttcaataat attgaaaaag gaagagtatg agtattcaac atttccgtgt 2041 cgcccttatt cccttttttg cggcattttg ccttcctgtt tttgctcacc cagaaacgct 2101 ggtgaaagta aaagatgctg aagatcagtt gggtgcacga gtgggttaca tcgaactgga 2161 tctcaacagc ggtaagatcc ttgagagttt tcgccccgaa gaacgttttc caatgatgag 2221 cacttttaaa gttctgctat gtggcgcggt attatcccgt attgacgccg ggcaagagca 2281 actcggtcgc cgcatacact attctcagaa tgacttggtt gagtactcac cagtcacaga 2341 aaagcatctt acggatggca tgacagtaag agaattatgc agtgctgcca taaccatgag 2401 tgataacact gcggccaact tacttctgac aacgatcgga ggaccgaagg agctaaccgc 2461 ttttttgcac aacatggggg atcatgtaac tcgccttgat cgttgggaac cggagctgaa 2521 tgaagccata ccaaacgacg agcgtgacac cacgatgcct gtagcaatgg caacaacgtt 2581 gcgcaaacta ttaactggcg aactacttac tctagcttcc cggcaacaat taatagactg 2641 gatggaggcg gataaagttg caggaccact tctgcgctcg gcccttccgg ctggctggtt 2701 tattgctgat aaatctggag ccggtgagcg tgggtctcgc ggtatcattg cagcactggg 2761 gccagatggt aagccctccc gtatcgtagt tatctacacg acggggagtc aggcaactat 2821 ggatgaacga aatagacaga tcgctgagat aggtgcctca ctgattaagc attggtaact 2881 gtcagaccaa gtttactcat atatacttta gattgattta aaacttcatt tttaatttaa 2941 aaggatctag gtgaagatcc tttttgataa tctcatgacc aaaatccctt aacgtgagtt 3001 ttcgttccac tgagcgtcag accccgtaga aaagatcaaa ggatcttctt gagatccttt 3061 ttttctgcgc gtaatctgct gcttgcaaac aaaaaaacca ccgctaccag cggtggtttg 3121 tttgccggat caagagctac caactctttt tccgaaggta actggcttca gcagagcgca 3181 gataccaaat actgttcttc tagtgtagcc gtagttaggc caccacttca agaactctgt 3241 agcaccgcct acatacctcg ctctgctaat cctgttacca gtggctgctg ccagtggcga 3301 taagtcgtgt cttaccgggt tggactcaag acgatagtta ccggataagg cgcagcggtc 3361 gggctgaacg gggggttcgt gcacacagcc cagcttggag cgaacgacct acaccgaact 3421 gagataccta cagcgtgagc tatgagaaag cgccacgctt cccgaaggga gaaaggcgga 3481 caggtatccg gtaagcggca gggtcggaac aggagagcgc acgagggagc ttccaggggg 3541 aaacgcctgg tatctttata gtcctgtcgg gtttcgccac ctctgacttg agcgtcgatt 3601 tttgtgatgc tcgtcagggg ggcggagcct atggaaaaac gccagcaacg cggccttttt 3661 acggttcctg gccttttgct ggccttttgc tcacatgttc tttcctgcgt tatcccctga 3721 ttctgtggat aaccgtatta ccgcctttga gtgagctgat accgctcgcc gcagccgaac 3781 gaccgagcgc agcgagtcag tgagcgagga agcggaagag cgcccaatac gcaaaccgcc 3841 tctccccgcg cgttggccga ttcattaatg cagctggcac gacaggtttc ccgactggaa 3901 agcgggcagt gagcgcaacg caattaatgt gagttagctc actcattagg caccccaggc 3961 tttacacttt atgcttccgg ctcgtatgtt gtgtggaatt gtgagcggat aacaatttca 4021 cacaggaaac agctatgacc atgattacgc caagcgcgca attaaccctc actaaaggga 4081 acaaaagctg gagctgcaag cttaatgtag tcttatgcaa tactcttgta gtcttgcaac 4141 atggtaacga tgagttagca acatgcctta caaggagaga aaaagcaccg tgcatgccga 4201 ttggtggaag taaggtggta cgatcgtgcc ttattaggaa ggcaacagac gggtctgaca 4261 tggattggac gaaccactga attgccgcat tgcagagata ttgtatttaa gtgcctagct 4321 cgatacataa acgggtctct ctggttagac cagatctgag cctgggagct ctctggctaa 4381 ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt 4441 gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccctttta gtcagtgtgg 4501 aaaatctcta gcagtggcgc ccgaacaggg acttgaaagc gaaagggaaa ccagaggagc 4561 tctctcgacg caggactcgg cttgctgaag cgcgcacggc aagaggcgag gggcggcgac 4621 tggtgagtac gccaaaaatt ttgactagcg gaggctagaa ggagagagat gggtgcgaga 4681 gcgtcagtat taagcggggg agaattagat cgcgatggga aaaaattcgg ttaaggccag 4741 ggggaaagaa aaaatataaa ttaaaacata tagtatgggc aagcagggag ctagaacgat 4801 tcgcagttaa tcctggcctg ttagaaacat cagaaggctg tagacaaata ctgggacagc 4861 tacaaccatc ccttcagaca ggatcagaag aacttagatc attatataat acagtagcaa 4921 ccctctattg tgtgcatcaa aggatagaga taaaagacac caaggaagct ttagacaaga 4981 tagaggaaga gcaaaacaaa agtaagacca ccgcacagca agcggccgct gatcttcaga 5041 cctggaggag gagatatgag ggacaattgg agaagtgaat tatataaata taaagtagta 5101 aaaattgaac cattaggagt agcacccacc aaggcaaaga gaagagtggt gcagagagaa 5161 aaaagagcag tgggaatagg agctttgttc cttgggttct tgggagcagc aggaagcact 5221 atgggcgcag cgtcaatgac gctgacggta caggccagac aattattgtc tggtatagtg 5281 cagcagcaga acaatttgct gagggctatt gaggcgcaac agcatctgtt gcaactcaca 5341 gtctggggca tcaagcagct ccaggcaaga atcctggctg tggaaagata cctaaaggat 5401 caacagctcc tggggatttg gggttgctct ggaaaactca tttgcaccac tgctgtgcct 5461 tggaatgcta gttggagtaa taaatctctg gaacagattt ggaatcacac gacctggatg 5521 gagtgggaca gagaaattaa caattacaca agcttaatac actccttaat tgaagaatcg 5581 caaaaccagc aagaaaagaa tgaacaagaa ttattggaat tagataaatg ggcaagtttg 5641 tggaattggt ttaacataac aaattggctg tggtatataa aattattcat aatgatagta 5701 ggaggcttgg taggtttaag aatagttttt gctgtacttt ctatagtgaa tagagttagg 5761 cagggatatt caccattatc gtttcagacc cacctcccaa ccccgagggg acccgacagg 5821 cccgaaggaa tagaagaaga aggtggagag agagacagag acagatccat tcgattagtg 5881 aacggatctc gacggtatcg atcacgagac tagcctcgag cggccgcccc cttcaccgag 5941 ggcctatttc ccatgattcc ttcatatttg catatacgat acaaggctgt tagagagata 6001 attggaatta atttgactgt aaacacaaag atattagtac aaaatacgtg acgtagaaag 6061 taataatttc ttgggtagtt tgcagtttta aaattatgtt ttaaaatgga ctatcatatg 6121 cttaccgtaa cttgaaagta tttcgatttc ttggctttat atatcttgtg gaaaggacga 6181 aacaccggtg tgttgtaaat gagcacacaa aatacacatg ctaaaatatt atattctatg 6241 acctttataa aatcaaccaa aatcttcttt ttaataactt tagtatcaat aattagaatt 6301 tttatgttcc tttttgcaaa cttttaataa aaatgagcaa aataaaaaaa cgctagtttt 6361 agtaactcgc gttgttttct tcacctttaa taatagctac tccaccactt gttcctaagc 6421 ggtcagctcc tgcttcaatc attttttgag catcttcaaa tgttctaact ccaccagctg 6481 ctttaactaa agcattgtct ttaacaactg acttcattag tttaacatct tcaaatgttg 6541 cacctgattt tgaaaatcct gttgatgttt taacaaattc taatccagct tcaacagcta 6601 tttcacaagc tttcatgatt tcttcttttg ttaataaaca attttccata atacatttaa 6661 caacatgtga tccagctgct ttttttacag ctttcatgtc ttctaaaact aattcataat 6721 ttttgtcttt taatgcacca atatttaata ccatatcaat ttctgttgca ccatctttaa 6781 ttgcttcaga aacttcgaat gcttttgtag ctgttgtgca tgcacctaga ggaaaaccta 6841 caacatttgt tattcctaca tttgtgcctt ttaataattc tttacaatag cttgttcaat 6901 atgaattaac acaaactgtt gcaaaatcaa attcaattgc ttcatcacat aattgtttaa 6961 tttcagcttt cgtagcatct tgttttaata atgtgtgatc tatatatttg tttagtttca 7021 ttttttctcc tatatattca tttttaattt taattcttta ataatttcgt ctactttaac 7081 tttagcgttt tgaacagatt caccaacacc tataaaataa atttttagtt taggttcagt 7141 tccacttggg cgaacagcaa atcatgactt atcttctaaa taaaatttta gtaagtcttg 7201 tcctggcata ttatacattc catcgatgta gtcttcaaca ttaacaactt taagtccagc 7261 aatttgagtt aagggtgttg ctctcaatga tttcattaat ggttcaattt ttaatttctt 7321 ttcttctggt ttaaaattca agtttaaagt gaaagtgtaa tatgcaccca tttctttaaa 7381 taaatcttct aaatagtcta ctaatgtttt attttgtttt ttataaaatc aagcagcctc 7441 tgctattaat atagaagctt gtattccatc tttatctcta gctgagtcat caattacata 7501 tccataactt tcttcataag caaaaacaaa atttaatccg ttatcttctt ctttagcaat 7561 ttctctaccc attcatttaa atccagttaa agtttttaca atattaactc catatttttc 7621 atgagcgatt ctatcaccca aatcacttgt tacaaaactt gaatatagag ccggattttt 7681 tggaatgcta tttaagcgtt ttagatttga taattttcaa tcaattaaaa ttggtcctgt 7741 ttgatttcca tctaatctta caaaatgacc atcatgtttt attgccattc caaatctgtc 7801 agcatctggg tcattcataa taataatatc tgcatcatgt ttaataccat attcaagcgg 7861 tatttttcat gcaggatcaa attctggatt tggatttaca acatttttaa atgtttcatc 7921 ttcaaatgca tgctcttcaa cctcaataac gttatatcct gattcacgta atatttttgg 7981 ggtaaattta gttcctgttc cattaactgc gctaaaaata atttttaaat cttttttagc 8041 ttcttgctct tttttgtaga attctcgacc tcgagacaaa tggcagtatt catccacaat 8101 tttaaaagaa aaggggggat tggggggtac agtgcagggg aaagaatagt agacataata 8161 gcaacagaca tacaaactaa agaattacaa aaacaaatta caaaaattca aaattttcgg 8221 gtttattaca gggacagcag agatccactt tggccgcggc tcgagggggt tggggttgcg 8281 ccttttccaa ggcagccctg ggtttgcgca gggacgcggc tgctctgggc gtggttccgg 8341 gaaacgcagc ggcgccgacc ctgggtctcg cacattcttc acgtccgttc gcagcgtcac 8401 ccggatcttc gccgctaccc ttgtgggccc cccggcgacg cttcctgctc cgcccctaag 8461 tcgggaaggt tccttgcggt tcgcggcgtg ccggacgtga caaacggaag ccgcacgtct 8521 cactagtacc ctcgcagacg gacagcgcca gggagcaatg gcagcgcgcc gaccgcgatg 8581 ggctgtggcc aatagcggct gctcagcagg gcgcgccgag agcagcggcc gggaaggggc 8641 ggtgcgggag gcggggtgtg gggcggtagt gtgggccctg ttcctgcccg cgcggtgttc 8701 cgcattctgc aagcctccgg agcgcacgtc ggcagtcggc tccctcgttg accgaatcac 8761 cgacctctct ccccaggggg atccaccgga gcttaccatg accgagtaca agcccacggt 8821 gcgcctcgcc acccgcgacg acgtccccag ggccgtacgc accctcgccg ccgcgttcgc 8881 cgactacccc gccacgcgcc a //
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